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i
The input file must contain at least the columns cdr3_TRA, TRAV, TRAJ for the α chain, or cdr3_TRB, TRBV, TRBJ for the β chain, or both.
Input 1
or
Input 2
optional — second dataset or baseline
Input 2 is:
i
If Baseline is selected, input2 is treated as a baseline repertoire. The CDR3 length distributions and CDR3 motifs for input2 are those expected with the VJ distribution in input1 (see Liu et al. BioRxiv 2025).